ConsensusTME

Overview

Consensus immune-cell deconvolution method that combines multiple gene-set/score-based tools to estimate the relative abundance of immune and stromal cell types in bulk tumor expression data.

Used by

• PMID:37202560 — used in the AC-ICAM colon cancer atlas to show that NK and T cell subset abundances were highest in ICR-high tumors across all CMS subtypes PMID:37202560.

Notes

• Used as a complement to the ICR signature to characterize the immune contexture associated with prognosis PMID:37202560.

Sources

• PMID:37202560

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