Datasets

Study ID Name Cancer type
acbc_mskcc_2015 MSKCC Adenoid Cystic Carcinoma of the Breast 2015  
acyc_jhu_2016 Adenoid Cystic Carcinoma (JHU, Cancer Prevention Research 2016)  
acyc_mda_2015 Adenoid Cystic Carcinoma — MD Anderson 2015  
acyc_mgh_2016 Adenoid Cystic Carcinoma (MGH, Nature Genetics 2016)  
acyc_mskcc_2013 Adenoid Cystic Carcinoma — MSKCC 2013  
acyc_sanger_2013 Adenoid Cystic Carcinoma — Sanger 2013  
all_stjude_2013 Hypodiploid ALL (St. Jude, Nature Genetics 2013)  
all_stjude_2015 Acute Lymphoblastic Leukemia (St Jude, Nat Genet 2015)  
all_stjude_2016 B-ALL DUX4/ERG Subtype — St. Jude / Multi-institutional (2016)  
ampca_bcm_2016 Ampullary Carcinoma (Baylor College of Medicine, Cell Reports 2016)  
appendiceal_msk_2022 Appendiceal Cancer (MSK, J Clin Oncol 2022) apad
bcc_unige_2016 NB-UVB Phototherapy Mutation Burden Cohort (Fowler et al. 2025)  
bladder_msk_2023 Urothelial Carcinoma (MSK, Clin Cancer Res 2023)  
blca_bcan_hcrn_2022 UC-GENOME (BCAN/HCRN Metastatic Urothelial Carcinoma) 2022  
blca_bgi BGI/UCGC Bladder Cancer 2013 (Guo)  
blca_cornell_2016 Bladder Urothelial Carcinoma — Weill Cornell (2016)  
blca_dfarber_mskcc_2014 Dana-Farber / MSKCC Bladder Urothelial Carcinoma Cisplatin Response (2014)  
blca_msk_2025 MSK Metastatic Urothelial Carcinoma cfDNA (CALGB 90601, 2025)  
blca_mskcc_solit_2012 MSKCC High-Grade Bladder Cancer 2012 (Solit)  
blca_mskcc_solit_2014 MSKCC Bladder Cancer Genomics Cohort (Solit 2014)  
blca_nmibc_2017 MSK Non-Muscle-Invasive Bladder Cancer Cohort (MSK, JCO 2017)  
blca_plasmacytoid_mskcc_2016 Plasmacytoid Bladder Carcinoma MSKCC 2016 (Al-Ahmadie et al.)  
blca_tcga_pan_can_atlas_2018 Bladder Urothelial Carcinoma (TCGA, PanCancer Atlas 2018)  
blca_tcga_pub TCGA Bladder Urothelial Carcinoma (2014)  
blca_tcga_pub_2017 TCGA Bladder Urothelial Carcinoma (2017, 412-tumor)  
bm_nsclc_mskcc_2023 Non-Small Cell Lung Cancer Brain Metastasis (MSK, Nat Commun 2023) nsclc
braf_msk_archer_2024 BRAF Fusions (MSK, Cancer Discovery 2024) — Archer/Fusion Panel  
braf_msk_impact_2024 BRAF Fusions (MSK, Cancer Discovery 2024) — MSK-IMPACT Tissue Panel  
brca_aurora_2023 AURORA US Metastatic Breast Cancer Study (2023)  
brca_bccrc BCCRC Breast Cancer WGS (brca_bccrc)  
brca_bccrc_xenograft_2014 Breast Cancer Xenografts (British Columbia, Nature 2015)  
brca_broad Breast Cancer — Broad WES/WGS (brca_broad)  
brca_igr_2015 Metastatic Breast Cancer (France/IGR, 2016)  
brca_metabric METABRIC Breast Cancer (brca_metabric)  
brca_sanger Breast Cancer — Sanger WES (brca_sanger)  
brca_tcga_pan_can_atlas_2018 Breast Invasive Carcinoma (TCGA, PanCancer Atlas 2018)  
brca_tcga_pub TCGA Breast Invasive Carcinoma (TCGA, Nature 2012)  
brca_tcga_pub2015 TCGA Breast Invasive Carcinoma (TCGA, Cell 2015)  
ccrcc_dfci_2019 DFCI ccRCC Immunotherapy Response Cohort (2019)  
ccrcc_irc_2014 Clear Cell Renal Cell Carcinoma Multiregion Sequencing (IRC 2014)  
ccrcc_utokyo_2013 ccRCC — UTokyo 2013 (manifest label)  
cellline_ccle_broad Cancer Cell Line Encyclopedia (Broad/Novartis)  
cellline_nci60 NCI-60 Human Cancer Cell Line Panel (cellline_nci60)  
cervix_msk_2023 Cervical Cancer (MSK, Gynecologic Oncology 2023)  
cesc_tcga_pan_can_atlas_2018 Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA, PanCancer Atlas 2018)  
chl_sccc_2023 Classical Hodgkins Lymphoma (SCCC, Blood Cancer Discov 2023) chl
chol_icgc_2017 ICGC Cholangiocarcinoma Multi-Omic Cohort 2017 (Jusakul et al.)  
chol_jhu_2013 JHU Intrahepatic Cholangiocarcinoma / Gallbladder Carcinoma WES 2013  
chol_tcga_pan_can_atlas_2018 Cholangiocarcinoma (TCGA, PanCancer Atlas 2018)  
cll_broad_2015 Chronic Lymphocytic Leukemia (Broad, Nature 2015)  
cll_broad_2022 Chronic Lymphocytic Leukemia (Broad, Nature Genetics 2022) cllsll
coad_caseccc_2015 Case Comprehensive Cancer Center CRC — African American Cohort (2015)  
coad_silu_2022 Colon Cancer (Sidra-LUMC AC-ICAM, Nat Med 2023) coad
coadread_dfci_2016 Colorectal Adenocarcinoma WES Cohort (Giannakis et al. 2016)  
coadread_genentech Colorectal Adenocarcinoma (Genentech, Nature 2012)  
coadread_mskcc MSKCC Colorectal Adenocarcinoma Triplets  
coadread_mskresistance_2022 MSK KRASG12C Colorectal Resistance 2022  
coadread_tcga Colorectal Adenocarcinoma (TCGA, Firehose Legacy) coadread
coadread_tcga_pan_can_atlas_2018 TCGA Pan-Cancer Atlas Colorectal Adenocarcinoma 2018  
coadread_tcga_pub Colorectal Adenocarcinoma (TCGA, Nature 2012)  
crc_msk_2017 MSK CRC IMPACT Cohort (2017)  
cscc_dfarber_2015 Dana-Farber Metastatic Cutaneous SCC Cohort (2015)  
cscc_hgsc_bcm_2014 Cutaneous Squamous Cell Carcinoma — HGSC/BCM 2014  
csf_msk_2024 CSF ctDNA MSK 2024  
ctcl_columbia_2015 Cutaneous T-Cell Lymphoma — Columbia 2015  
desm_broad_2015 Desmoplastic Melanoma (Broad/UCSF 2015)  
difg_glass Diffuse Glioma (GLASS International Consortium)  
difg_msk_2023 IDH-mutant Low-Grade Glioma Active Surveillance, MSK, Clin Cancer Res 2023  
dlbc_broad_2012 Diffuse Large B-Cell Lymphoma (Broad, 2012)  
dlbcl_duke_2017 DLBCL Duke 2017 (Reddy et al.)  
egc_msk_2017 MSK Esophagogastric Cancer (Janjigian et al. 2017)  
egc_msk_2023 Esophagogastric Cancer (MSK, JCO Oncology Practice 2023)  
egc_tmucih_2015 Gastric Adenocarcinoma (TMUCIH, PNAS 2015)  
egc_trap_ccr_msk_2023 HER2-Positive Esophagogastric Cancer — TRAP Trial (MSK, Cancer Cell Reports 2023)  
es_iocurie_2014 Ewing Sarcoma — Institut Curie / St. Jude 2014  
esca_broad Esophageal Adenocarcinoma — Broad/Columbia (Dulak 2013)  
escc_ucla_2014 Esophageal Squamous Cell Carcinoma (UCLA 2014)  
gbc_mskcc_2022 MSK Gallbladder Carcinoma 2022  
gbm_tcga TCGA Glioblastoma Multiforme  
gbm_tcga_pan_can_atlas_2018 Glioblastoma Multiforme (TCGA, PanCancer Atlas 2018)  
gbm_tcga_pub2013 TCGA Glioblastoma 2013 (Publication Freeze)  
gct_msk_2016 Germ Cell Tumors (MSK, J Clin Oncol 2016)  
gist_msk_2022 MSK GIST Germline Study (2022)  
gist_msk_2023 Gastrointestinal Stromal Tumor Genomic Risk Stratification, MSK, Clin Cancer Res 2023  
gpcchn-poznan Greater Poland Cancer Centre HNSCC Cohort (Poznań)  
hcc_inserm_fr_2015 HCC INSERM France 2015 (Schulze et al.)  
hcc_jcopo_msk_2023 Hepatocellular Carcinoma cfDNA (MSK, JCO Precision Oncology 2023)  
hcc_msk_2024 Biliary Tract and Hepatocellular Carcinoma Hidden-Genome Classifier, MSK, Clin Cancer Res 2024  
hnc_mskcc_2016 Recurrent and Metastatic Head & Neck Cancer (MSK, JAMA Oncol 2016)  
hnsc_broad HNSCC Broad (Stransky 2011)  
hnsc_jhu HNSCC JHU (Agrawal 2011)  
hnsc_mdanderson_2013 Oral Squamous Cell Carcinoma — MD Anderson (Pickering 2013)  
hnsc_tcga_pub TCGA Head and Neck Squamous Cell Carcinoma (2015)  
kich_tcga_pub TCGA Chromophobe Renal Cell Carcinoma (2014)  
kirc_tcga TCGA Kidney Renal Clear Cell Carcinoma (KIRC)  
kirc_tcga_pub TCGA Kidney Renal Clear Cell Carcinoma — Publication Cohort  
laml_tcga_pan_can_atlas_2018 Acute Myeloid Leukemia (TCGA, PanCancer Atlas 2018)  
laml_tcga_pub Acute Myeloid Leukemia — TCGA (2013)  
lcll_broad_2013 Chronic Lymphocytic Leukemia (Broad, Nature 2013)  
lgg_tcga TCGA Lower-Grade Glioma  
lgg_ucsf_2014 UCSF Recurrent Glioma Cohort (2014)  
lgggbm_tcga_pub Merged Cohort of LGG and GBM (TCGA, Cell 2016)  
lihc_amc_prv Hepatocellular Carcinoma — Asan Medical Center (AMC) Private Cohort  
lihc_riken RIKEN HCC Genomics (lihc_riken)  
lms_msk_2024 Leiomyosarcoma (MSK, Annals of Oncology 2024)  
luad_broad Lung Adenocarcinoma (Broad, Nature Genetics 2012)  
luad_mskcc_2023_met_organotropism Lung Adenocarcinoma Met Organotropism (MSK, Cancer Cell 2023) luad
luad_tcga_pan_can_atlas_2018 Lung Adenocarcinoma (TCGA, PanCancer Atlas 2018)  
luad_tcga_pub TCGA Lung Adenocarcinoma (LUAD)  
luad_tsp Lung Adenocarcinoma Tumour Sequencing Project (TSP)  
lung_msk_2017 MSK-IMPACT Lung Adenocarcinoma Cohort (Jordan 2017)  
lung_msk_mind_2020 MSK-MIND Lung Cancer Multimodal 2020  
lung_smc_2016 Lung Cancer (Samsung Medical Center, 2016)  
lusc_tcga_pub Lung Squamous Cell Carcinoma (TCGA, Nature 2012)  
makeanimpact_ccr_2023 MSK Make-An-IMPACT (MSK, Clin Cancer Res 2023) mixed
mbl_broad_2012 Medulloblastoma (Broad, Nature 2012)  
mbl_dkfz_2017 DKFZ / ICGC PedBrain Medulloblastoma WGS 2017 (Northcott et al.)  
mbl_icgc Medulloblastoma (ICGC, Nature 2012)  
mbl_pcgp Medulloblastoma — PCGP WGS (mbl_pcgp)  
mbl_sickkids_2016 Medulloblastoma — SickKids 2016  
mbn_msk_2024 Mature B-Cell Neoplasms (MSK, Blood Advances 2024)  
mcl_idibips_2013 IDIBAPS Mantle Cell Lymphoma 2013 (Beà)  
mds_tokyo_2011 MDS Tokyo 2011 (Yoshida)  
mel_iatlas_riaz_nivolumab_2017 CA209-038 Melanoma Nivolumab (Riaz et al. 2017)  
mel_tsam_liang_2017 Acral Melanoma TSAM Cohort (Liang 2017)  
mel_ucla_2016 Melanoma UCLA Anti-PD-1 Cohort (Hugo et al. 2016)  
metastatic_solid_tumors_mich_2017 MET500 — Michigan Oncology Sequencing Metastatic Solid Tumors 2017 (Robinson et al.)  
mixed_pipseq_2017 Pediatric Precision Sequencing (PIPseq, Columbia, 2017)  
mm_broad Multiple Myeloma Research Consortium WES/WGS Cohort (Broad, 2014)  
mng_utoronto_2021 Meningioma (University of Toronto, Nature Genetics 2021)  
mnm_washu_2016 AML/MDS Decitabine Trial — Washington University (2016)  
mpn_cimr_2013 Cambridge CIMR Myeloproliferative Neoplasms WES 2013  
mpnst_mskcc Malignant Peripheral Nerve Sheath Tumor — MSKCC  
mrt_bcgsc_2016 Malignant Rhabdoid Tumor BCGSC 2016 (Chun et al.)  
msk_ch_2023 Cancer Therapy and Clonal Hematopoiesis, MSK, Blood Adv 2023  
msk_chord_2024 MSK-CHORD Clinicogenomic Harmonized Real-World Dataset, Nature 2024  
msk_ctdna_vte_2024 ctDNA and Venous Thromboembolism (MSK, 2024)  
msk_impact_2017 MSK-IMPACT Clinical Sequencing Cohort (MSK, Nat Med 2017) mixed
msk_spectrum_tme_2022 MSK SPECTRUM Tumor Microenvironment Study (2022)  
mtnn_msk_2022 Mature T and NK Neoplasms (MSK, Blood Adv 2023) mtnn
nbl_amc_2012 Neuroblastoma (AMC, 2012)  
nbl_broad_2013 Neuroblastoma (Broad, TARGET 2013)  
nbl_ucologne_2015 Neuroblastoma (University of Cologne, Nature 2015)  
nccrcc_genentech_2014 Non-Clear Cell Renal Cell Carcinoma — Genentech 2014  
nepc_wcm_2016 Neuroendocrine Prostate Cancer (Weill Cornell Medicine, Nature Medicine 2016)  
nhl_bcgsc_2011 BCGSC Non-Hodgkin Lymphoma Genome and Exome Sequencing  
normal_skin_melanocytes_2024 Normal Skin Melanocytes and Keratinocytes (2024)  
nsclc-radiogenomics-stanford NSCLC Radiogenomics (Stanford / AMC)  
nsclc_ctdx_msk_2022 Metastatic Non-Small Cell Lung Cancer (MSK, Nature Medicine 2022) nsclc
nsclc_mskcc_2015 MSKCC NSCLC Pembrolizumab Cohort (Rizvi 2015)  
nsclc_pd1_msk_2018 MSK NSCLC Anti-PD-1 Prospective Cohort (2018)  
nsclc_tcga_broad_2016 NSCLC Integrated Exome Cohort (Campbell et al. 2016)  
nsclc_tracerx_2017 TRACERx 100 NSCLC Cohort (UCL/CRUK, Nature 2017)  
nsclc_unito_2016 Non-Small Cell Lung Cancer (University of Turin, Lung Cancer 2017)  
odg_msk_2017 MSK Anaplastic Oligodendroglioma Cohort (MSK, JCO 2017)  
ov_tcga TCGA Ovarian Serous Cystadenocarcinoma (OV)  
ov_tcga_pub TCGA Ovarian Serous Cystadenocarcinoma  
ovary_geomx_gray_foundation_2024 Ovarian HGSOC Precursor Lesions — GeoMx Spatial Profiling (Gray Foundation 2024)  
paac_jhu_2014 JHU Pancreatic Acinar Cell Carcinoma / Pancreatoblastoma WES 2014  
paad_icgc ICGC Pancreatic Adenocarcinoma  
paad_tcga TCGA Pancreatic Adenocarcinoma (Firehose Legacy)  
paad_utsw_2015 PAAD UT Southwestern 2015 (Witkiewicz et al.)  
pact_jhu_2011 Pancreatic Cystic Tumors (JHU, 2011)  
paired_bladder_2022 MSK Paired Bladder Cancer Primary-Metastasis Study (2022)  
pancan_mimsi_msk_2024 Pan-Cancer MSK MiMSI MSI Cohort (2024)  
pancreas_msk_2024 MSK Resected PDAC KRAS-Allele Cohort (2024)  
panet_jhu_2011 Johns Hopkins Pancreatic Neuroendocrine Tumor Exome Sequencing  
past_dkfz_heidelberg_2013 Pilocytic Astrocytoma — DKFZ/Heidelberg ICGC PedBrain 2013  
pcawg Pan-Cancer Analysis of Whole Genomes (PCAWG) mixed
pcnsl_mayo_2015 PCNSL Mayo Clinic 2015 (Chapuy et al.)  
pcnsl_msk_2024 PCNSL MSK Ibrutinib Phase I/II Cohort (2024)  
pcpg_tcga_pub TCGA Pheochromocytoma and Paraganglioma (PCPG, Cancer Cell 2017)  
pdac_msk_2024 MSK PDAC Prospective Sequencing Cohort (2024)  
plmeso_msk_2024 Diffuse Pleural Mesothelioma (MSK, 2024)  
pog570_bcgsc_2020 BC Cancer Personalized OncoGenomics (POG) Program — Metastatic NEN Cohort 2025  
prad_broad Broad Prostate Adenocarcinoma WES (prad_broad)  
prad_broad_2013 Prostate Adenocarcinoma — Broad/Cornell (Baca 2013)  
prad_fhcrc Metastatic Castration-Resistant Prostate Cancer FHCRC 2016 (Kumar et al.)  
prad_mich Prostate Cancer — Michigan WES (prad_mich)  
prad_msk_mdanderson_2023 Prostate Cancer PDX (MSK / MD Anderson, 2023)  
prad_mskcc MSKCC Prostate Cancer Integrative Genomic Profiling  
prad_mskcc_2014 MSKCC Prostate Cancer CNA Burden Cohort (2014)  
prad_mskcc_2017 MSK-IMPACT Prostate Cancer Clinical Sequencing Cohort 2017 (Abida et al.)  
prad_mskcc_cheny1_organoids_2014 MSKCC Prostate Cancer Organoids (Gao/Chen 2014)  
prad_p1000 Prostate Adenocarcinoma Pan-1000 Meta-Cohort (Armenia et al. 2018)  
prad_su2c_2015 Prostate Adenocarcinoma SU2C / PCF 2015 (Robinson et al.)  
prad_su2c_2019 Prostate Cancer (SU2C/PCF Dream Team, 2019)  
prad_tcga Prostate Adenocarcinoma (TCGA, 2015)  
prad_tcga_pan_can_atlas_2018 Prostate Adenocarcinoma (TCGA, PanCancer Atlas 2018)  
prad_tcga_pub Prostate Adenocarcinoma — TCGA 2015  
prostate_msk_2024 Prostate Cancer (MSK, 2024)  
ptad_msk_2024 Pituitary Neuroendocrine Tumors (MSK, 2024)  
radcure RADCURE Head and Neck Cancer RT Dataset  
rms_msk_2023 Pediatric Rhabdomyosarcomas (MSK, JCO Precis Oncol 2023) rms
rms_nih_2014 NCI/NIH Rhabdomyosarcoma Genomic Cohort (2014)  
sarc_mskcc MSKCC Sarcoma Genome Project  
sarc_tcga_pub TCGA Sarcoma (SARC)  
sarcoma_msk_2023 Radiation-Associated Sarcomas (MSK, 2023)  
sarcoma_ucla_2024 UCLA Sarcoma Patient-Derived Tumor Organoid Biobank (2024)  
scco_mskcc Small Cell Carcinoma of the Ovary (MSKCC 2014)  
sclc_cancercell_gardner_2017 SCLC PDX Chemoresistance Cohort (Gardner 2017)  
sclc_clcgp Small Cell Lung Cancer (CLCGP, Nature Genetics 2012)  
sclc_jhu Small Cell Lung Cancer (JHU, Nature Genetics 2012)  
sclc_ucologne_2015 University of Cologne Small Cell Lung Cancer 2015  
skcm_broad Skin Cutaneous Melanoma (Broad, Cell 2012)  
skcm_broad_brafresist_2012 Broad/DeCOG BRAF-Inhibitor Resistance in Metastatic Melanoma WES 2012  
skcm_broad_dfarber Broad/DFCI Cutaneous Melanoma WGS (skcm_broad_dfarber)  
skcm_dfci_2015 Skin Cutaneous Melanoma (DFCI, Science 2015)  
skcm_mskcc_2014 Melanoma (MSK, NEJM 2014)  
skcm_tcga_pub_2015 SKCM TCGA 2015 (TCGA Melanoma Working Group)  
skcm_yale Skin Cutaneous Melanoma (Yale, Nat Genet 2012)  
stad_tcga_pub TCGA Stomach Adenocarcinoma (STAD)  
stes_tcga_pub TCGA Esophageal and Stomach Cancers (STES, Nature 2017)  
stmyec_wcm_2022 WCM Soft Tissue Myoepithelial Carcinoma WGS Study (2022)  
summit_2018 SUMMIT Basket Trial — Neratinib in HER2/HER3-Mutant Cancers (2018)  
tcia-hn1-maastro TCIA H&N1 HNSCC (MAASTRO)  
tcia-hn2-vumc TCIA H&N2 HNSCC (VU University Medical Center)  
tcia-hnscc TCIA HNSCC Collection (MD Anderson)  
tcia-multiple-delineation TCIA Multiple Delineation (Inter-Observer)  
tcia-nsclc-radiomics-genomics-lung3 TCIA NSCLC-Radiomics-Genomics Lung3  
tcia-nsclc-radiomics-lung1 TCIA NSCLC-Radiomics Lung1 (MAASTRO)  
tcia-nsclc-radiomics-lung2 TCIA NSCLC-Radiomics Lung2 (Radboud)  
tcia-rider-lung TCIA RIDER Lung CT (Test-Retest)  
tcia-tcga-gbm TCIA TCGA-GBM MRI Collection  
tcia-tcga-lgg TCIA TCGA-LGG MRI Collection  
tcia-tcga-ov TCIA TCGA-OV CT Imaging Collection  
tet_nci_2014 Thymic Epithelial Tumors — NCI 2014  
thca_tcga_pan_can_atlas_2018 Thyroid Carcinoma (TCGA, PanCancer Atlas 2018)  
thca_tcga_pub Papillary Thyroid Carcinoma (TCGA, Cell 2014)  
thyroid_gatci_2024 Anaplastic Thyroid Carcinoma (GATCI, 2024)  
thyroid_mskcc_2016 Advanced Thyroid Carcinoma MSKCC 2016 (Landa et al.)  
uccc_nih_2017 NIH Uterine Clear Cell Carcinoma Exome Cohort (NIH, JCO 2017)  
ucec_ancestry_cds_msk_2023 Endometrial Carcinoma Ancestry Study (MSK, 2023)  
ucec_msk_2024 Endometrial and Gynecologic Cancers, Nivolumab Trial (MSK, 2024)  
ucec_tcga_pub Endometrial Carcinoma — TCGA (2013)  
ucs_jhu_2014 Uterine Carcinosarcoma — JHU 2014  
um_qimr_2016 Uveal Melanoma — QIMR 2016  
urcc_mskcc_2016 Unclassified Renal Cell Carcinoma — MSKCC (2016)  
utuc_mskcc_2015 MSKCC Upper Tract Urothelial Carcinoma 2015  
uvm_tcga Uveal Melanoma — TCGA  
vsc_cuk_2018 Korea Catholic University Vulvar SCC WES Cohort (2018)  
No matching items